A list of selected publications from Sensor CDT students can be found below. These articles are research outcomes from the Sensor Team Challenges and Mini-Research Projects during the MRes year, as well as from PhD projects. For information regarding patents achieved by the Sensor CDT students, please see the Student Patents, Prizes, Awards and Scholarships page.
2022
Gilbride B, Ellis MG, et al, Cao C. Peroxidase-Mimicking Activity of Biogenic Gold Nanoparticles Produced from Prunus nepalensis Fruit Extract: Characterizations and Application for the Detection of Mycobacterium bovis. ACS Appl Bio Mater. 2022 Jun 20;5(6):2712-2725. doi: 10.1021/acsabm.2c00180. Epub 2022 May 11. PMID: 35545815; PMCID: PMC9214696.
Gentleman AS, Lawson T, Ellis MG, et al, Euser TG. Stern-Volmer analysis of photocatalyst fluorescence quenching within hollow-core photonic crystal fibre microreactors. Chem Commun (Camb). 2022 Sep 20;58(75):10548-10551. doi: 10.1039/d2cc03996f. PMID: 36047311.
Alawami MF, et al Keyser UF. Lifetime of glass nanopores in a PDMS chip for single-molecule sensing. iScience. 2022 Apr 4;25(5):104191. doi: 10.1016/j.isci.2022.104191. PMID: 35479403; PMCID: PMC9036133.
Balfourier A, Marty AP, Gazeau F. Importance of Metal Biotransformation in Cell Response to Metallic Nanoparticles: A Transcriptomic Meta-analysis Study. ACS Nanosci Au. 2022 Sep 30;3(1):46-57. doi: 10.1021/acsnanoscienceau.2c00035. PMID: 36820094; PMCID: PMC9936776.
Nagaraj M, Najarzadeh Z, Pansieri J, Biverstål H, Musteikyte G, et al. Otzen DE. Chaperones mainly suppress primary nucleation during formation of functional amyloid required for bacterial biofilm formation. Chem Sci. 2021 Dec 13;13(2):536-553. doi: 10.1039/d1sc05790a. PMID: 35126986; PMCID: PMC8729806.
Ayazi F, Collins J, Knapper J, Stirling J, Bowman R, Cicuta P. Multi-modal microscopy imaging with the OpenFlexure Delta Stage. Opt Express. 2022 Jul 18;30(15):26377-26395. doi: 10.1364/OE.450211. PMID: 36236831.
Mouthaan R, Wilkinson TD, et al. Computer-generated holography in the intermediate domain. J Opt Soc Am A Opt Image Sci Vis. 2022 Mar 1;39(3):392-400. doi: 10.1364/JOSAA.442492. PMID: 35297422.
Alimagham FC, Hutter T, et al. Monitoring Neurochemistry in Traumatic Brain Injury Patients Using Microdialysis Integrated with Biosensors: A Review. Metabolites. 2022 Apr 26;12(5):393. doi: 10.3390/metabo12050393. PMID: 35629896; PMCID: PMC9146878.
Bondareva E, Constantinides M, Eggleston MS, Jablonski I, Mascolo C, Radivojevic Z, Scepanovic S. Stress Inference from Abdominal Sounds using Machine Learning. Annu Int Conf IEEE Eng Med Biol Soc. 2022 Jul;2022:1985-1988. doi: 10.1109/EMBC48229.2022.9871165. PMID: 36083920.
Hecker L, Christensen CN, Mascheroni L, Chung CW, Schierle GSK, Kaminski CF, et al. Machine learning assisted interferometric structured illumination microscopy for dynamic biological imaging. Nat Commun. 2022 Dec 21;13(1):7836. doi: 10.1038/s41467-022-35307-0. PMID: 36543776; PMCID: PMC9772218.
Manton JD. Answering some questions about structured illumination microscopy. Philos Trans A Math Phys Eng Sci. 2022 Apr 4;380(2220):20210109. doi: 10.1098/rsta.2021.0109. Epub 2022 Feb 14. PMID: 35152757; PMCID: PMC8841787.
Grys DB, de Nijs B, et al. Tracking water dimers in ambient nanocapsules by vibrational spectroscopy. Proc Natl Acad Sci U S A. 2022 Dec 6;119(49):e2212497119. doi: 10.1073/pnas.2212497119. Epub 2022 Dec 1. PMID: 36454753; PMCID: PMC9894256.
Barberio C, Owens RM, et al. Conducting Polymer-ECM Scaffolds for Human Neuronal Cell Differentiation. Adv Healthc Mater. 2022 Oct;11(20):e2200941. doi: 10.1002/adhm.202200941. Epub 2022 Aug 17. PMID: 35904257.
Mouthaan R, Alexander-Webber JA, et al. Automated Computer Vision-Enabled Manufacturing of Nanowire Devices. ACS Nano. 2022 Nov 22;16(11):18009-18017. doi: 10.1021/acsnano.2c08187. Epub 2022 Sep 26. PMID: 36162100; PMCID: PMC9706672.
Orozco CT, Siouve E, Jackson SE, et al. Mechanistic insights into the rational design of masked antibodies. MAbs. 2022 Jan-Dec;14(1):2095701. doi: 10.1080/19420862.2022.2095701. PMID: 35799328; PMCID: PMC9272835.
Heck JR, Mouthaan R, Knowles TPJ, Euser TG, et al. Label-free monitoring of proteins in optofluidic hollow-core photonic crystal fibres. Methods Appl Fluoresc. 2022 Sep 20;10(4). doi: 10.1088/2050-6120/ac9113. PMID: 36084629.
Jacquat RPB, Kartanas T, Knowles TPJ, et al. Microscale Diffusiophoresis of Proteins. J Phys Chem B. 2022 Nov 10;126(44):8913-8920. doi: 10.1021/acs.jpcb.2c04029. Epub 2022 Oct 28. PMID: 36306420; PMCID: PMC9661530.
Woodington B, Malliaras G, Barone DG, et al. Spinal cord bioelectronic interfaces: opportunities in neural recording and clinical challenges. J Neural Eng. 2022 Apr 14;19(2). doi: 10.1088/1741-2552/ac605f. PMID: 35320780.
Schack S, Franck CO, Kaminski CF, Christie G, Fruk L, et al. Tuning riboflavin derivatives for photodynamic inactivation of pathogens. Sci Rep. 2022 Apr 21;12(1):6580. doi: 10.1038/s41598-022-10394-7. PMID: 35449377; PMCID: PMC9022420.
Simatos D, Sirringhaus H, et al. High-Efficiency Ion-Exchange Doping of Conducting Polymers. Adv Mater. 2022 Jun;34(22):e2102988. doi: 10.1002/adma.202102988. Epub 2021 Aug 21. PMID: 34418878.
van Tartwijk FW, Kaminski CF. Protein Condensation, Cellular Organization, and Spatiotemporal Regulation of Cytoplasmic Properties. Adv Biol (Weinh). 2022 Nov;6(11):e2101328. doi: 10.1002/adbi.202101328. Epub 2022 Jul 7. PMID: 35796197.
van Niekerk, D. Owens RM. et al. Organic Bioelectronics for In Vitro Systems. Chem Rev. 2022 Feb 23;122(4):4700-4790. doi: 10.1021/acs.chemrev.1c00539. Epub 2021 Dec 15. PMID: 34910876.
Woodington BJ, Coles L, et al. Proctor CM, Malliaras GG. X-Ray Markers for Thin Film Implants. Adv Healthc Mater. 2022 Sep;11(18):e2200739. doi: 10.1002/adhm.202200739. Epub 2022 Aug 7. PMID: 35871265.
J. A. Park, Y. Youm, H. Lee, S. L. Barron et al. 2022. Trasfer-Tattoo-Like Cell-Sheet Delivery Induced by Interfacial Cell Migration. Advanced Materials. doi/10/1002/adma. 202204390
M. Nguyen, U Kraft, W. L. Tan, I. Dobryden, K. Broch, W. Zhang, H. Un, D. Simatos et al. 2022. Improving OFF-State Bias-Stress Stability in High-Mobility Conjugated Polymer Transistors with an Anti-Solvent Treatment. Advanced Materials. doi/10/1002/adma.202205377
B. J. Woodington, L. Coles, et. al. 2022. X-Ray Markers for Thin Film Implants. Advanced Healthcare Materials. Vol 11, Issue 18. doi: 10.1002/adhm.202200739
C. Moschner, C. Wedd, S. Bakshi. The context matrix: Navigating biological complexity for advanced biodesign. Front. Bioeng. Biotechnol., 23 August 2022.
L.Coles, P. Oluwasanya, N. Karam, C. Proctor. Fluidic enabled bioelectronic implants: opportunities and challenges. J. Mater. Chem. B, 2022,10, 7122-7131.
Hanneman, A., Fawden, T., Branciforte, M., Virzì, M. C., Moss, E. L., Ost, L., & Zecca, M. Novel Low Memory Footprint DNN Models for Edge Classification of Surgeons’ Postures. IEEE Embedded Systems Letters, 2022.
K. Gibson, S.Jackson, V.Lindo.Toward Rapid Aspartic Acid Isomer Localization in Therapeutic Peptides Using Cyclic Ion Mobility Mass Spectrometry. J. Am. Soc. Mass Spectrom. 2022, 33, 7, 1204–1212.
I. Dobryden, V. Korolkov, V. Lemaur, M.Waldrip, H. Un, D. Simatos, L.Spalek, O. Jurchescu, Y. Olivier, P. Claesson & D. Venkateshvaran. Dynamic self-stabilization in the electronic andnanomechanical properties of an organic polymersemiconductor. Nature Communications,13:3076, 2022.
M.Nagaraj, Z.Najarzadeh, J.Pansieri, H.Biverstål, G. Musteikyte, V. Smirnovas, S.Matthews, C.Emanuelsson, J.Johansson, J.Buxbaum, L.Morozova-Roche, and D. E. Otzen. Chaperones mainly suppress primary nucleation during formation of functional amyloid required for bacterial biofilm formation. Chem. Sci., 13:536–553, 2022.
V. Tsoutsouras, O.Kaparounakis, B.Bilgin, C. Samarakoon, J.Meech, J.Heck, and P.Stanley-Marbell. 2022. The Laplace Microarchitecture for Tracking Data Uncertainty and Its Implementation in a RISC-V Processor," IEEE Micro,doi:10.1109/MM.2022.3166067
2021
NS Priyanka, PA Oriama, PP Pedersen, S Horstmann…Spatial variation of fine particulate matter levels in Nairobi before and during the COVID-19 curfew: implications for environmental justice - Environmental Research Communications, 2021
S. Velasco-Bosom, N.Karam, G. Malliaras. Conducting Polymer-Ionic Liquid Electrode Arrays for High-Density Surface Electromyography. Advanced Healthcare Materials, 2100374, 2021.
Barron, S.L., Saez, J. and Owens, R.M., 2021. "In Vitro Models for Studying Respiratory Host–Pathogen Interactions". Advanced Biology, p.2000624.
Bryant EM, Bayliss D, Santerne A, Wheatley PJ, Nascimbeni V, Ducrot E, Pedersen, P et al "A transit timing variation observed for the long-period extremely low-density exoplanet HIP 41378 f" Monthly Notices of the Royal Astronomical Society: Letters 504 (1), L45-L50. 2021
Horstmann, S. et al. "Capacitive touchscreen sensing - A measure of electrolyte conductivity. Sens. Actuators", B 345, 130318, (2021). DOI
Huang J, Grys D, Griffiths J, Nijs B, Kamp M, Lin Q and Baumberg J, "Tracking interfacial single-molecule pH and binding dynamics via vibrational spectroscopy" Science Advances 04 Jun 2021: Vol. 7, no. 23, eabg1790 DOI
Jacobs, I., Lin, Y., Huang, Y., Ren, X., Simatos, D., Chen, C., Tjhe, D., Statz, M., Lai, L., Finn, P., Neal, W., D'Avino, G., Lemaur, V., Fratini, S., Beljonne, D., Strzalka, J., Nielsen, C., Barlow, S., Marder, S., McCulloch, I., Sirringhaus, H. "High-Efficiency Ion-Exchange Doping of Conducting Polymers" Advanced Materials (2021) DOI
J. T. Meech and P. Stanley-Marbell, “An Algorithm for Sensor Data Uncertainty Quantification” 2021. IEEE Sensors Letters, in press.
Leleu A., Alibert Y., Hara NC., Hooton MJ, Wilson TG, Robutel P, Delisle JB, Pedersen, P et al "Six transiting planets and a chain of Laplace resonances in TOI-178" Astronomy & Astrophysics 649, A26. 2021
Leri, M., Chaudhary, H., Iashchishyn, I. A., Pansieri, J., Svedružić, Z. M., Gómez Alcalde, S., Musteikyte, G., Smirnovas, V., Stefani, M., Bucciantini, M., & others. "Natural Compound from Olive Oil Inhibits S100A9 Amyloid Formation and Cytotoxicity: Implications for Preventing Alzheimer’s Disease". (2021). ACS Chemical Neuroscience.
Lu, M., Ward, E.*, van Tartwijk, F. W.*, & Kaminski, C. F. (2021). "Advances in the study of organelle interactions and their role in neurodegenerative diseases enabled by super-resolution microscopy". Neurobiology of Disease, 159, 105475. DOI
Middya S, Curto V F, Fernández-Villegas A, Robbins M, Gurke J, Moonen E J M, Kaminski Schierle G S, and Malliaras G M. "Microelectrode Arrays for Simultaneous Electrophysiology and Advanced Optical Microscopy", Advanced Science, 2021, 2004434. https://doi.org/10.1002/advs.20200443
Middya S, Kaminski Schierle G S, Malliaras G M, and Curto V F. "Lithography and Electrodes, Chemical Solution Synthesis for Materials Design and Thin Film Device Applications", Elsevier, 2021
Milde, S., van Tartwijk, F. W., Vilalta, A., Hornik, T. C., Dundee, J. M., Puigdellívol, M., & Brown, G. C. (2021). "Inflammatory neuronal loss in the substantia nigra induced by systemic lipopolysaccharide is prevented by knockout of the P2Y6 receptor in mice". Journal of Neuroinflammation, 18(1), 225. DOI
Panchal,V.,Dobryden, I., Hangen, U., Simatos, D., Spalek, L., Jacobs, I., Schweicher, G., Claesson, P., Venkateshvaran, D.,"Mechanical Properties of Organic Electronic Polymers on the Nanoscale" Advanced Electronic Materials, (2021) DOI
Sebastian D, Gillon M, Ducrot E, Pozuelos FJ, Garcia LJ, Günther MN, Pedersen, P et al "SPECULOOS: Ultracool dwarf transit survey-Target list and strategy" Astronomy & Astrophysics 645, A100. 2021
Simatos D., Spalek L. J., Kraft U., Nikolka M., Jiao X., McNeill C.R., Venkateshvaran D., and Sirringhaus H. "The effect of the dielectric end groups on the positive bias stress stability of N2200 organic field effect transistors" (2021) DOI
T. Newton, J.T. Meech and P. Stanley-Marbell, "Machine Learning for Sensor Transducer Conversion Routines", in IEEE Embedded Systems Letters, in press. 2021. DOI
Vasileios Tsoutsouras, Orestis Kaparounakis, Bilgesu Bilgen, Chatura Samarakoon, James T. Meech, Jan Heck, and Philip Stanley-Marbell. 2021. "The Laplace Microarchitecture for Tracking Data Uncertainty and Its Implementation in a RISC-V Processor". In MICRO-54: 54th Annual IEEE/ACM International Symposium on Microarchitecture (MICRO '21). Association for Computing Machinery, New York, NY, USA, 1254-1269. DOI
Woodington BJ, Curto VF, Yu YL, Martínez-Domínguez H, Coles L, Malliaras GG, Proctor CM, Barone DG. "Electronics with shape actuation for minimally invasive spinal cord stimulation", Sci Adv. 2021 Jun 25;7(26):eabg7833. PMID: 34172452; PMCID: PMC8232905. DOI
2020
Bhattacharjee M, Middya S, Escobedo P, Chaudhuri J, Bandyopadhyay D, Dahiya R. "Microdroplet based disposable sensor patch for detection of α-amylase in human blood serum". Biosens Bioelectron. Oct 1;165:112333. PMID: 32729478. (2020) DOI
Boys, A. J., Barron, S. L., Tilev, D., & Owens, R. M. "Building Scaffolds for Tubular Tissue Engineering". Frontiers in Bioengineering and Biotechnology, 8. (2020) DOI
Christensen CN, et al “ML-SIM: A deep neural network for reconstruction of structured illumination microscopy images” arXiv (2020) 2003.11064.
Christopher PJ, Mouthaan R, Bheemireddy V, Wilkinson TD "Improving performance of single-pass real-time holographic projection", Optics Communications, (2020) 457, 124666. DOI
Christopher PJ, Mouthaan R, Gordon GSD, Wilkinson TD "Holographic Predictive Search: Extending the scope", Optics Communications, (2020) 125701, 1.
Christopher PJ, Mouthaan R, Soliman AM, Wilkinson TD "Sympathetic quantisation - A new approach to hologram quantisation", Optics Communications, (2020) 125883, 1.
Chung, C. W., Kaminski Schierle, G. S., "Intracellular thermometry to study protein aggregation related to neurodegenerative diseases, Trends Biol. Sci., 2021, 46, 251-252. DOI
Chung, C. W., Kaminski Schierle, G. S., "Intracellular thermometry at the micro/nanoscale and its potential application to study protein aggregation related to neurodegenerative diseases", Chem. Biol. Chem., 2021, 22, 1–14. DOI
D Al Sulaiman, I Steer, S Pavagada, S Ladame, "Device Engineering, Bioengineering Innovative Solutions for Cancer", 73-91
D. Sebastian, P. P. Pedersen, C. A. Murray, E. Ducrot, L. J. Garcia, A. Burdanov, F. J. Pozuelos, L. Delrez, R. Wells, G. Dransfield, M. Gillon, B.-O. Demory, D. Queloz, A. H. M. J. Triaud, J. De Witt, E. Jehin, Y. Gómez Maqueo Chew, M. N. Günther, P. Niraula, B. V. Rackham, N. Schanche, S. Sohy, S. Thompson, "Development of the SPECULOOS exoplanet search project," Proc. SPIE 11445, Ground-based and Airborne Telescopes VIII, 1144521 (13 December 2020). DOI
Emmenegger M, De Cecco E, Lamparter D, Jacquat RPB, et al "Population-wide evolution of SARS-CoV-2 immunity tracked by a ternary immunoassay", medRxiv (2020). DOI
Franck, C. O., Fruk, L., Fanslau, L., Popov, A. B., & Tyagi, P. (2020). "Biopolymer‐based Carriers for DNA Vaccine Design". Angewandte Chemie. DOI
Grigoroiu A, Yoon J, Bohndiek SE "Deep learning applied to hyperspectral endoscopy for online spectral classification", Sci Rep (2020) 10, 3947. DOI
Grys D, Bart de Nijs, Andrew R. Salmon, Junyang Huang, Wenting Wang, Wei-Hsin Chen, Oren A. Scherman, and Jeremy J. Baumberg, "Citrate Coordination and Bridging of Gold Nanoparticles: The Role of Gold Adatoms in AuNP Aging" ACS Nano 2020 14 (7), 8689-8696 DOI DOI: 10.1021/acsnano.0c03050
Grys D, Chikkaraddy R, Kamp M, Scherman O, Baumberg J, Nijs B, "Eliminating irreproducibility in SERS substrates" 28 October 2020 DOI
Gunther, M., Berardo, D., Ducrot, E., Murray, C., Stassun, K., Ol'ah, K., Bouma, L., Rappaport, S., Winn, J., Feinstein, A., Matthews, E., Sebastian, D., Rackham, B., Seli, B., Triaud, A.H., Gillen, E., Levine, A.M., Demory, B., Gillon, M., Queloz, D., Ricker, G., Vanderspek, R., Seager, S., Latham, D., Jenkins, J.M., Brasseur, C., Col'on, K., Daylan, T., Delrez, L., Garcia, L., Jayaraman, R., Jehin, E., Kristiansen, M.H., Kruijssen, J., Pedersen, P.P., Pozuelos, F., Rodriguez, J., Wohler, B., & Zhan, Z. "Complex Modulation of Rapidly Rotating Young M Dwarfs: Adding Pieces to the Puzzle" arXiv: Solar and Stellar Astrophysics. (2020). DOI
J. Zammit and I. J. Wassell, "Adaptive Block Compressive Sensing: Toward a Real-Time and Low-Complexity Implementation," in IEEE Access, vol. 8, pp. 120999-121013, 2020. DOI
Kadis, A., Wang, Y., Dong, D., Christopher, P., Mouthaan, R., & Wilkinson, T. "HoloBlade: An Open-Hardware Spatial LightModulator Driver Platform for HolographicDisplays", Applied Optics. (2020). DOI
Krainer G, Saar KL, Arter WE, Jacquat RPB, Peter Q, Challa P, Taylor CG, Klenerman D, Knowles TPJK "Direct digital sensing of proteins in solution through single-molecule optofluidics", bioRxiv (2020). DOI
Liao, Y.-C., Fernandopulle, M. S., Wang, G., Choi, H., Hao, L., Drerup, C. M., Patel, R., Qamar, S., Nixon-Abell, J., Shen, Y., Meadows, W., Vendruscolo, M., Knowles, T. P. J., Nelson, M., Czekalska, M. A., Musteikyte, G., Gachechiladze, M. A., Stephens, C. A., Pasolli, H. A., … Ward, M. E. (2019). "RNA Granules Hitchhike on Lysosomes for Long-Distance Transport, Using Annexin A11 as a Molecular Tether. Cell", 179(1), 147-164.e20. DOI
Lin, J. Q., Van Tartwijk, F. W., & Holt, C.E. (2020). "Axonal mRNA translation in neurological disorders". RNA Biology. 1-26. DOI
Lu M, van Tartwijk FW, Christensen, C.N., Lin JQ, Nijenhuis W, Parutto P, Fantham M, & Kaminski, C. F. "The structure and global distribution of the endoplasmic reticulum network is actively regulated by lysosomes", bioRxiv (2020) 2020.2001.2015.907444. DOI
Meech J, Stanley-Marbell P "Efficient Programmable Random Variate Generation Accelerator from Sensor Noise", Embedded Systems Letters (2020) in press. DOI
Murray CA, Delrez L, Pedersen PP, Queloz D, Gillon M, Burdanov A, Ducrot E, Garcia LJ, Lienhard F, Demory BO, Jehin E, McCormac J, Sebastian D, Sohy S, Thompson SJ, Triaud AHMJ , Grootel VV , Günther MN, Huang CX "Photometry and Performance of SPECULOOS-South", MNRAS, (2020) 495, 2446-2457. DOI
Musteikytė, G., Jayaram, A. K., Xu, C. K., Vendruscolo, M., Krainer, G., & Knowles, T. P. J. (2020). "Interactions of α-synuclein oligomers with lipid membranes". Biochimica et Biophysica Acta (BBA)-Biomembranes, 183536.
Musteikyte, G., Ziaunys, M., & Smirnovas, V. "Methylene blue inhibits nucleation and elongation of SOD1 amyloid fibrils". PeerJ, 8, e9719 (2020). DOI
Niraula, P., Wit, J. de, Rackham, B. V., Ducrot, E., Burdanov, A., Crossfield, I. J. M., Grootel, V. V., Murray, C., Garcia, L. J., Alonso, R., Beard, C., Maqueo Chew, Y. G., Delrez, L., Demory, B.-O., Fulton, B. J., Gillon, M., Günther, M. N., Howard, A. W., Issacson, H.,Pedersen, P.P., … Triaud, A. H. M. J. (2020). π Earth: A 3.14 day Earth-sized Planet from K2’s Kitchen Served Warm by the SPECULOOS Team. The Astronomical Journal, 160(4), 172. DOI
N. J. Tye, J. T. Meech, B. A. Bilgin and P. Stanley-Marbell, "A System for Generating Non-Uniform Random Variates using Graphene Field-Effect Transistors," 2020 IEEE 31st International Conference on Application-specific Systems, Architectures and Processors (ASAP), Manchester, United Kingdom, 2020, pp. 101-108, DOI
Opstad IS, Ströhl F, Fantham M, Hockings C, Vanderpoorten O, van Tartwijk FW, Qiaojin Lin J, Tinguely J-C, Dullo FT, Kaminski-Schierle GS, Ahluwalia BS, Kaminski CF "A waveguide imaging platform for live-cell TIRF imaging of neurons over large fields of view", J. Biophotonics (2020) e201960222. PDF DOI
Pansieri, J., Musteikyte, G., et al. "Templating S100A9 amyloids on Aβ fibrillar surfaces revealed by charge detection mass spectrometry, microscopy, kinetic and microfluidic analyses". Chemical Science, 11(27), 7031–7039. (2020). DOI
Pavagada S, Channon RB, Chang JYH, Kim SH, MacIntyre D, Bennett PR, Terzidou V, Ladame S, "Oligonucleotide-templated lateral flow assays for amplification-free sensing of circulating microRNAs", Chem. Commun. 2019, 55, 12451-12454.
Pavagada S, Ladame S, "Platforms for bioorthogonal oligonucleotide-templated reactions: Translating Concepts into devices", Chimia (Swiss Chemical Society) 2018, 72, 809-814.
Pavagada S, Dhar C, Srivastava S, "Circulating nucleic acids: An analysis of their occurrence in malignancies", Biomed Rep 2017, 6(1), 8–14.
Sebastian, D., Gillon, M., Ducrot, E., Pozuelos, F., Garcia, L.J., Gunther, M., Delrez, L., Queloz, D., Demory, B., Triaud, A.H., Burgasser, A., Wit, J., Burdanov, A., Dransfield, G., Jehin, E., Mccormac, J., Murray, C.A., Niraula, P., Pedersen, P.P., Rackham, B., Sohy, S., Thompson, S., & Grootel, V.V. "SPECULOOS: Ultracool dwarf transit survey. Target list and strategy". Astronomy and Astrophysics. (2020) DOI
S.M. Sibug-Torres, L.P. Go, E.P. Enriquez. "Fabrication of a 3D-printed porous junction for Ag/AgCl/gel-KCl reference electrode", Chemosensors. 8 (2020) DOI
Ströhl F, Lin JQ, van Tartwijk FW, Wong HH-W, Holt CE, Kaminski CF "A protocol for single molecule translation imaging in Xenopus retinal ganglion cells", in N Yamamoto & Y Okada (Eds.), Single Molecule Microscopy (1 ed.): Springer US (2020).
Thomas CN, Withington S, Sun Z, Skyrme T, Goldie DJ "Nonlinear effects in superconducting thin film microwave resonators", New J Phys (2020) in press. DOI
Triaud AHMJ, Burgasser AJ, Burdanov A, Hodžić VK, Alonso R, Gagliuffi DB, Delrez L, Demory BO, de Wit J, Ducrot E, Hessman FV, Husser TO, Jehin E, Pedersen PP, Queloz D, McCormac J, Murray C, Sebastian D, Thompson SJ, Van Grootel V, Gillon M "An eclipsing substellar binary in a young triple system discovered by SPECULOOS", Nat Astron, (2020). DOI
Triaud, A. H. M. J., Burgasser, A. J., Burdanov, A., Hodžić, V. K., Alonso, R., Bardalez Gagliuffi, D., Delrez, L., Demory, B.-O., De Wit, J., Ducrot, E., Hessman, F. V., Husser, T.-O., Jehin, E., Pedersen, P. P., Queloz, D., McCormac, J., Murray, C., Sebastian, D., Thompson, S., … Gillon, M. (2020). "A Rare Pair of Eclipsing Brown Dwarfs Identified by the SPECULOOS Telescopes", Published in The Messenger Vol. 180, pp. 37-40, June 2020. DOI
Tye N, Meech J, Bilgin B, Stanley-Marbell P "A System for Generating Non-Uniform Random Variates using Graphene Field-Effect Transistors", Application-specific Systems, Architectures and Processors (2020) in press.
Wang Y, Dong D, Christopher PJ, Kadis A, Mouthaan R, Yang F, Wilkinson TD "Hardware implementations of computer-generated holography: A reviews", Optical Engineering, (2020) 59 (10), 102413. DOI
Xu Y, Jacquat RPB, Shen Y, Vigolo D, Morse D, Zhang S, Knowles TPJ "Microfluidic templating of spatially inhomogeneous protein microgels", Small (2020) 2000432. DOI
Yoon J, Grigoroiu A, Bohndiek SE "A background correction method to compensate illumination variation in hyperspectral imaging", PLoS One (2020) Mar 13;15(3):e0229502. DOI
2019
Armitage J, Spalek LJ, Nguyen M, Nikolka M, Jacobs IE, Maranon L, Nasrallah I, Schweicher G, Dimov I, Simatos, D, McCulloch I, Nielsen CB, Conduit G, Sirringhaus H "Fragment Graphical Variational AutoEncoding for Screening Molecules with Small Data", arXiv: 1910.13325 (2019)
Bhattacharjee, M., Middya, S., & Bandyopadhyay, D. (2019). "Point‐of‐care stress detection of muscles using a flexible surface potential measurement prototype". MEDICAL DEVICES & SENSORS, 2(5–6). (2019). DOI
Christensen CN, et al, “Simple and robust speckle detection method for fire and heat detection in harsh environments” Appl. Opt., (2019) 58, 28, 7760.
Gordon GSD, Mouthaan R, Wilkinson TD, Bohndiek S E "Coherent Imaging Through Multicore Fibres with Applications in Endoscopy," Journal of Lightwave Technology (2019) 10.1109/JLT.2019.2932901. DOI
Gordon GSD, Gataric M, Ramos AGCP, Mouthaan R, Williams C, Yoon J, Wilkinson TD, Bohndiek SE "Characterizing Optical Fiber Transmission Matrices Using Metasurface Reflector Stacks for Lensless Imaging without Distal Access" Phys. Rev. X, 9, 041050. DOI
Hughes J, Maiolino P, Iida F "An anthropomorphic soft skeleton hand exploiting conditional model for piano playing", Science Robotics (2019) Under revision.Gilday K, Hughes J, Iida F "Gel-based soft interfaces for fastener manipulation in robotic agile assembly", IROS (2019) Submitted, under review.
Hughes J, Maiolino P, Iida F "Compliance-driven exploration for the detection of hard inclusions in soft bodies", Robotics and Automation Letters (2019) Under revision.
Hughes J, Maiolino P, Iida F "Sensorized phantom for characterising large area deformation of soft bodies", Robotics and Automation Letters (2019) Under revision.
Liao, Y.-C., Musteikyte, G., Fernandopulle et al. "RNA Granules Hitchhike on Lysosomes for Long-Distance Transport, Using Annexin A11 as a Molecular Tether". Cell, 179(1), 147-164.e20. (2019) DOI
Maj C, Azevedo T, Giansanti V, Borisov O, Dimitri GM, Spasov S, Lio P, Merelli I "Integration of machine learning methods to dissect genetically imputed transcriptomic profiles in Alzheimer's Disease", Front Genet (2019) DOI
Marschner DE, Franck CO, Abt D, Mutlu H, Barner-Kowollik C "Fully independent photochemical reactivity in one molecule", Chem Commun (2019) DOI
Meech J, Crabtree C, Rácz Z, "Star Type Wireless Sensor Network for Future Distributed Structural Health Monitoring Applications", Inventions (2019), 4: 1, 6 DOI
Nikolka M, Simatos, D, Foudeh A, Pfattner R, McCulloch I, Bao Z "Low-voltage, dual-gate organic transistors with high-sensitivity and stability towards electrostatic biosensing", ACS Appl Mater Interfaces (2020) DOI
Shigeoka T, Koppers M, Wong HH-W, Lin JQ, Cagnetta R, Dwivedy A, de Freitas Nascimento J, van Tartwijk FW, Ströhl F, Cioni J-M, Schaeffer J, Carrington M, Kaminski CF, Jung H, Harris WA, Holt CE "On-site ribosome remodeling by locally synthesized ribosomal proteins in axons", J Cel Rep (2019) 11, 25. DOI
S.M. Sibug-Torres, E.P. Enriquez, "Design of potentiometric sensor arrays using fisher information and genetic algorithm", in: (2019) IEEE 1st International Conference on Electrical, Control, and Instrumentation Engineering. DOI
S.M. Sibug-Torres, E.P. Enriquez, "Information theoretic analysis of potentiometric sensor array configurations", in: (2019) IEEE 9th Int. Conf. Syst. Eng. Technol., IEEE, (2019): pp. 465–470. DOI
S.M. Sibug-Torres, I.D. Padolina, E.P. Enriquez, "Radial multi-stationary phase thin-layer chromatography for the field-ready fingerprinting of herbal materials", Analytical Methods. 11 (2019) 5511–5520. DOI
S.M. Sibug-Torres, I.D. Padolina, P. Cruz, M.R. Yabillo, F.C. Garcia, M.J. Garrovillas, E.P. Enriquez, "Smartphone-based image analysis and chemometric pattern recognition of the thin-layer chromatographic fingerprints of herbal materials, Analytical Methods". 11 (2019) 693–862. DOI
Spasov S, Lio P, "Dynamic neural network channel execution for efficient training", Proc BMVC Conf (2019) arXiv
Spasov S, Passamonti L, Duggento A, Liò P, Toschi N "A parameter-efficient deep learning approach to predict conversion from mild cognitive impairment to Alzheimer's disease", NeuroImage (2019) DOI
Vallejo Ramirez PP, Zammit J, Vanderpoorten O, Riche F, Blé F-X, Zhou X-H, Spiridon B, Valentine C, Spasov SE, Oluwasanya PW, Goodfellow G, Fantham MJ, Siddiqui O, Alimagham F, Robbins M, Stretton A, Simatos D, Hadeler O, Rees EJ, Ströhl F, Laine RF, Kaminski CF "OptiJ: Open-source optical projection tomography of large organ samples", Sci Rep 9, (2019) 15693 DOI
Vanderpoorten O, Peter Q, Challa PK, Keyser UF, Baumberg J, Kaminski CF, Knowles TPJK "Scalable integration of nano-, and microfluidics with hybrid two-photon lithography", Microsystems & Nanoengineering (2019) 5: 40 DOI
2018
Birrel S, Hughes J, Iida F "A data-driven approach to selective robotic harvesting of iceberg lettuce", Journal of Field Robotics (2018) Submitted, under review.
Chen H-Y, Schweicher G, Planells M, Ryno SM, Broch K, White AJP, Simatos D, Little M, Jellett C, Cryer SJ, Marks A, Hurhangee M, Brédas J-L, Sirringhaus H, McCulloch I "Crystal engineering of dibenzothiophenothieno [3,2-b]thiophene (DBTTT) isomers for organic field-effect transistors", Chem. Mater. (2018) 30: 21, 7587-7592. DOI
Christensen CN, Iles-Smith J, Petersen TS, Mork J, McCutcheon DPS "Driving-induced population trapping and linewidth narrowing via the quantum Zeno effect", Phys. Rev. A (2018) 97: 6, 063807.
Frechter S, Bates AS, Tootoonian S, Dolan M-J, Manton JD, Jamasb A, Kohl J, Bock D, Jefferis GSXE "Functional and anatomical specificity in a higher olfactory centre", bioRxiv (2018). DOI
Ghosh A, Manton JD, Mustafa AR, Gupta M, Garcia A, Rees EJ, Christie G "Proteins encoded by the gerP operon are localised to the inner coat in Bacillus cereus spores and are dependent on GerPA and SafA for assembly", Applied and Environmental Microbiology (2018). DOI
Gielen F, Colin P-Y, Mair P, Hollfelder F "Ultrahigh-throughput screening of single-cell lysates for directed evolution and functional metagenomics", Protein Engineering: Methods and Protocols (eds Bornscheuer UT, Hohne M) (2018), 297-309 (Springer New York, 2018).
Gilday K, Hughes J, Iida F "Achieving flexible assembly using autonomous robotic systems" IROS Conference (2018) Accepted.
He C, Ji H, Huang Z, Wang T, Zhang X, Liu Y, Fang M, Wu X, Zhang J, Min X "Red-shifted emission in Y3MgSiAl3012: Ce3+ Garnet Phosphor for blue light pumped white light emitting diodes", J. Phys. Chem. C (2018), 122: 27, 15659-15665. DOI |
Huang J, de Nijs B, Cormier S, Sokolowski K, Grys D-B, Readman CA, Barrow SJ, Scherman OA, Baumberg J "Plasmon-Induced Optical Control over Dithionite-Mediated Chemical Redox Reactions", Faraday Discuss. (2018). DOI
Hughes J, et al "Achieving robotically peeled lettuce", IEEE Robotics and Automation Letters (2018) 2377-3766. DOI | pdf
Hughes J, Iida F "Localised differential sensing of soft deformable surfaces", Soft Robotics (2018).
Hughes J, Iida F "Multi-functional soft strain sensors for wearable physiological monitoring", Sensors (2018) Accepted.
Hughes J, Iida F "Tack and deformation based sensorised gripping using conducive hot melt adhesive", RoboSoft Conference (2018).
Laine RF, Goodfellow G, Young LJ, Travers J, Carroll D, Dibben O, Bright H, Kaminski CF "Structured illumination microscopy combined with machine learning enables the high throughput analysis and classification of virus structure", eLife (2018);7:e40183. DOI
van Loo B, Heberlein M, Mair P, Zinchenko A, Schuurmann J, Eenink BDG, Dilkaute C, Jose J, Hollfelder F, Bornberg-Bauer E "High-Throughput, Lysis-free screening for sulfatase activity using Escherichia coli autodisplay in microdroplets", bioRxiv (2018). DOI
Manton JD, Xiao Y, Turner RD, Christie G, Rees EJ "ELM: Super-resolution analysis of wide-field images of fluorescent shell structures", Methods and Applications in Fluorescence (2018), 6: 037001. DOI
Ruggiero MT, Kölbel J, Li Q, Zeitler JA "Predicting the structures and associated phase transitions mechanisms in disordered crystals via a combination of experimental and theoretical methods", Faraday Discuss. (2018). DOI
Ruggiero MT, Kölbel J, Zhang W, Mittleman DM, Zeitler JA "The atomic dynamics of disordered crystals elucidated with terahertz time-domain spectroscopy and ab initio simulations", In Proc. of 43rd Int. Conf. on Infrared, Millimeter, and Terahertz Waves (IRMMW-THz) (2018) DOI.
Spasov SE, Hauk O, Farahibozorg S-R "Decoding semantic word categories from electro- and magnetoencephalography data", Proc. 15th Int. Conf. on Computational Intelligence Methods for Bioinformatics and Biostatistics, Springer (2018).
Spasov SE, Passamonti L, Duggento A, Lio P, Toschi N "A multi-model convolutional neural network framework for the prediction of Alzheimers Disease", Proc. 40th Annual Int. Conf. IEEE Engineering in Medicine and Biology Society (EMBC) (2018).
Spiridon BF, Griffin PH, Jarman JC, Liu Y, Zhu T, Luca AD, Oliver RA, Udrea F "On-Chip Thermal Insulation Using Porous GaN", Eurosensors Proceedings (2018), 2, 776.
Wang T, Centeno A, Darvill D, Pang JS, Ryan MP, Xie F "Tuneable fluorescence enhancement over nanostructure ZnO arrays with controlled morphology", Physical Chemistry Chemical Physics (2018), 20(21): 14828-14834. DOI
Wang T, Kim H-K, Liu Y, Li W, Griffiths JT, Wu Y, Laha S, Fong KD, Padjaski F, Yun C, Vasant Kumar R, Lotsch BV, Cheetham AK, Smoukov SK "Bottom-up formation of carbon-based structures with multilevel hierarchy from MOF-guest polyhedra", J. Am. Chem. Soc. (2018), 140(19): 6130-6136. DOI
2017
Bonner O, Beardsall K, Crilly N, et al "There were more wires than him: the potential for wireless patient monitoring in neonatal intensive care", BMJ Innovations (2017), 3: 12-18.
Cheah M, Hughes J, Iida F "Data synthesization for classification in autonomous robotic grasping system using 'catalogue-style' images", TAROS (2017) Springer, Cham.
Culha U, Hughes J, et al "Design principles for soft-rigid hybrid manipulators", Soft Robotics: Trends, Applications and Challenges (2017) Springer, Cham, 87-94.
Fong KD, Wang T, Smoukov SK "Multidimensional performance optimisation of conducting polymer-based supercapacitor electrodes", Sustainable Energy & Fuels (2017), 1(9): 1857-1874. DOI
Fong KD, Wang T, Kim H-K, Vasant Kumar R, Smoukov SK "Semi-Interpenetrating polymer networks for enhanced supercapacitor electrodes", ACS Energy Letters (2017) 2(9): 2014-2020. DOI
Gordillo-Dagallier L, Olivares J, Marco-Dufort B, Olivera J, Escolano J, Mirea T, Clement M, Iborra E "Integration of multilayered graphene on AIN based resonators as a functionalisation platform for biosensors", Joint Conference of the European Frequency and Time Forum and IEEE International Frequency Control Symp (2017).
Hughes J, Iida F, "Localised differential sensing of soft deformable surfaces", Robotics and Automation (2017), IEEE International Conf.
Hughes J, Iida F, "3D printed sensorised soft robotic manipulator design", Conference towards autonomous robotic systems (2017), Springer, Cham.
Lin I-T, Wang T, Zhang F, Smoukov SK "Fault-tolerant electro-responsive surfaces for dynamic micropattern molds and tunable optics", Scientific Report (2017), 7:12481. DOI
Mair P, Gielen F, Hollfelder F "Exploring sequence space in search of functional enzymes using microfluidic droplets", Current Opinion Chemical Biology (2017), 37: 137-144.
Marco B, Gordillo-Dagallier L, Escolano J, Olivares J, Clement M, Mejias D, Iborra E "Integration of graphene on AIN based high frequency resonators and their functionalisation for biosensing", Proceedings (2017) 4: 539.
Occhipinti LG, Oluwasanya PW "Particulate matter monitoring: Past, present and future, a review", Int J Earth Environ Sci (2017), 2: IJEES-144.
Wang T, Farajollahi M, Henke S, Zhu T, Bajpe SR, Sun S, Barnard JS, Lee JS, Madden JDW, Cheetham AK, Smoukov SK "Functional conductive nanomaterials via polymerisation in nano-channels: PEDOT in a MOF", Materials Horizons (2017), 4(1): 64-71. DOI
Watson J, Hughes J, Iida F "Real-world, real-time robotic grasping with convolutional neural networks", Conference towards autonomous robotic systems, (2017) Springer, Cham.
2016
Cai W, Vanderpoorten O, Kaminski CF "Tomographic absorption spectroscopy based on wavelength modulcation and multi-harmonic detections", Imaging and Applied Optics (2016) OSA Technical Digest (online), JT3A.19. DOI
Costa M, Manton JD, Ostrovsky AD, Prohaska S, Jefferis G "NBLAST: Rapid, sensitive comparison of neuronal structure and construction of neuron family databases", Neuron (2016), 91, 293-311. DOI |
Hemmig EA, Creatore C, Wunsch B, Hecker L, Mair P, Parker MA, Emmott S, Tinnefeld P, Keyser UF, Chin AW "Programming Light-Harvesting Efficiency Using DNA Origami", Nano Lett (2016), 16:2369-2374.
Hughes J, et al "Soft manipulators and grippers: A review", Frontiers in Robotics and AI (2016), 69.
Hughes J "Robotic rescue simulation for computing teaching in the UK: A case study", Global Engineering Education Conference (EDUCON) (2016), IEEE.
Manton JD, Rees EJ "triSPIM: light sheet microscopy with isotropic super-resolution", Optics Letters (2016), 41: 4170-4173. DOI |
Manton JD, Hughes J, Bonner O, Amjad OA, Mair P, Miele I, Wang T, Levdik V, Hall RD, Baekelandt G, da Cruz Vasconcellos F, Hadeler H, Hutter T, Kaminski CF "Development of an open technology sensor suite for assisted living: a student-led research project", Interface Focus (2016), 6: 20160018. DOI |
Rughoobur G, DeMiguel-Ramos T, Mirea M, Clement J, Olivares B, Díaz-Durán B, Sangrador J, Miele I, Milne WI, Iborra E, Flewitt AJ "Room temperature sputtering of inclined c-axis ZnO for shear mode solidly mounted resonators", App. Phys. Lett. (2016), 108, 034103. DOI |
Wang T, Farajollahi M, Choi YS, Lin I-T, Marshall JE, Thompson NM, Kar-Narayan S, Madden JDW, Smoukov SK "Electroactive polymers for sensing", Interface Focus (2016), 6: 20160026. DOI |
Wang T, Farajollahi M, Henke S, Zhu T, Bajpe SR, Sun S, Barnard JS, Sang Lee J, Madden JDW, Cheetham AK, Smoukov SK. "Functional Conductive Nanomaterials via Polymerisation in Nano-channels: PEDOT in a MOF", Mater. Horiz., Communication (2016). DOI
2015
Hughes J, Yan J, Soga K "Development of wireless sensor network using Bluetooth low energy (BLE) for construction noise monitoring", International Journal on Smart Sensing and Intelligent Systems (2015), 8(2), 1379-1405. pdf
Manetsberger J, Manton JD, Erdelyi MJ, Lin H, Rees D, Christie G, Rees EJ "Ellipsoid localization microscopy infers the size and order of protein layers in bacillus spore coats", Biophys. J. (2015), 109(10), 2058-2066. DOI |
Wang T, Costan J, Centeno A, Pang JS, Darvill D, Ryan MP, Xie F "Broadband Enhanced Fluorescence Using Zinc-oxide Nanoflower Arrays", J. Mater. Chem. C. (2015) 3: 2656-2663. DOI
2014
Manton JD, Ostrovsky AD, Goetz L, Costa M, Rohlfing T, Jefferis GSXE "Combining genome-scale Drosophila 3D neuroanatomical data by bridging template brains", bioRxiv (2014). DOI
