A list of selected publications from Sensor CDT students can be found below. These articles are research outcomes from the Sensor Team Challenges and Mini-Research Projects during the MRes year, as well as from PhD projects. For information regarding patents achieved by the Sensor CDT students, please see the Student Patents, Prizes, Awards and Scholarships page.
2020
Christensen CN, et al “ML-SIM: A deep neural network for reconstruction of structured illumination microscopy images” arXiv (2020) 2003.11064.
Christopher PJ, Mouthaan R, Bheemireddy V, Wilkinson TD "Improving performance of single-pass real-time holographic projection", Optics Communications, (2020) 457, 124666. DOI
Christopher PJ, Mouthaan R, Gordon GSD, Wilkinson TD "Holographic Predictive Search: Extending the scope", Optics Communications, (2020) 125701, 1.
Christopher PJ, Mouthaan R, Soliman AM, Wilkinson TD "Sympathetic quantisation - A new approach to hologram quantisation", Optics Communications, (2020) 125883, 1.
Emmenegger M, De Cecco E, Lamparter D, Jacquat RPB, et al "Population-wide evolution of SARS-CoV-2 immunity tracked by a ternary immunoassay", medRxiv (2020). DOI
Grigoroiu A, Yoon J, Bohndiek SE "Deep learning applied to hyperspectral endoscopy for online spectral classification", Sci Rep (2020) 10, 3947. DOI
Krainer G, Saar KL, Arter WE, Jacquat RPB, Peter Q, Challa P, Taylor CG, Klenerman D, Knowles TPJK "Direct digital sensing of proteins in solution through single-molecule optofluidics", bioRxiv (2020). DOI
Lu M, van Tartwijk FW, Lin JQ, Nijenhuis W, Parutto P, Fantham M et al "The structure and global distribution of the endoplasmic reticulum network is actively regulated by lysosomes", bioRxiv (2020) 2020.2001.2015.907444. DOI
Meech J, Stanley-Marbell P "Efficient Programmable Random Variate Generation Accelerator from Sensor Noise", Embedded Systems Letters (2020) in press.
Murray CA, Delrez L, Pedersen PP, Queloz D, Gillon M, Burdanov A, Ducrot E, Garcia LJ, Lienhard F, Demory BO, Jehin E, McCormac J, Sebastian D, Sohy S, Thompson SJ, Triaud AHMJ , Grootel VV , Günther MN, Huang CX "Photometry and Performance of SPECULOOS-South", MNRAS, (2020) 495, 2446-2457. DOI
Opstad IS, Ströhl F, Fantham M, Hockings C, Vanderpoorten O, van Tartwijk FW, Qiaojin Lin J, Tinguely J-C, Dullo FT, Kaminski-Schierle GS, Ahluwalia BS, Kaminski CF "A waveguide imaging platform for live-cell TIRF imaging of neurons over large fields of view", J. Biophotonics (2020) e201960222. PDF DOI
Ströhl F, Lin JQ, van Tartwijk FW, Wong HH-W, Holt CE, Kaminski CF "A protocol for single molecule translation imaging in Xenopus retinal ganglion cells", in N Yamamoto & Y Okada (Eds.), Single Molecule Microscopy (1 ed.): Springer US (2020).
Thomas CN, Withington S, Sun Z, Skyrme T, Goldie DJ "Nonlinear effects in superconducting thin film microwave resonators", New J Phys (2020) in press. DOI
Triaud AHMJ, Burgasser AJ, Burdanov A, Hodžić VK, Alonso R, Gagliuffi DB, Delrez L, Demory BO, de Wit J, Ducrot E, Hessman FV, Husser TO, Jehin E, Pedersen PP, Queloz D, McCormac J, Murray C, Sebastian D, Thompson SJ, Van Grootel V, Gillon M "An eclipsing substellar binary in a young triple system discovered by SPECULOOS", Nat Astron, (2020). DOI
Tye N, Meech J, Bilgin B, Stanley-Marbell P "A System for Generating Non-Uniform Random Variates using Graphene Field-Effect Transistors", Application-specific Systems, Architectures and Processors (2020) in press.
Wang Y, Dong D, Christopher PJ, Kadis A, Mouthaan R, Yang F, Wilkinson TD "Hardware implementations of computer-generated holography: A reviews", Optical Engineering, (2020) 59 (10), 102413. DOI
Xu Y, Jacquat RPB, Shen Y, Vigolo D, Morse D, Zhang S, Knowles TPJ "Microfluidic templating of spatially inhomogeneous protein microgels", Small (2020) 2000432. DOI
Yoon J, Grigoroiu A, Bohndiek SE "A background correction method to compensate illumination variation in hyperspectral imaging", PLoS One (2020) Mar 13;15(3):e0229502. DOI
2019
Armitage J, Spalek LJ, Nguyen M, Nikolka M, Jacobs IE, Maranon L, Nasrallah I, Schweicher G, Dimov I, Simatos, D, McCulloch I, Nielsen CB, Conduit G, Sirringhaus H "Fragment Graphical Variational AutoEncoding for Screening Molecules with Small Data", arXiv: 1910.13325 (2019)
Christensen CN, et al, “Simple and robust speckle detection method for fire and heat detection in harsh environments” Appl. Opt., (2019) 58, 28, 7760.
Gordon GSD, Mouthaan R, Wilkinson TD, Bohndiek S E "Coherent Imaging Through Multicore Fibres with Applications in Endoscopy," Journal of Lightwave Technology (2019) 10.1109/JLT.2019.2932901. DOI
Gordon GSD, Gataric M, Ramos AGCP, Mouthaan R, Williams C, Yoon J, Wilkinson TD, Bohndiek SE "Characterizing Optical Fiber Transmission Matrices Using Metasurface Reflector Stacks for Lensless Imaging without Distal Access" Phys. Rev. X, 9, 041050. DOI
Hughes J, Maiolino P, Iida F "An anthropomorphic soft skeleton hand exploiting conditional model for piano playing", Science Robotics (2019) Under revision.Gilday K, Hughes J, Iida F "Gel-based soft interfaces for fastener manipulation in robotic agile assembly", IROS (2019) Submitted, under review.
Hughes J, Maiolino P, Iida F "Compliance-driven exploration for the detection of hard inclusions in soft bodies", Robotics and Automation Letters (2019) Under revision.
Hughes J, Maiolino P, Iida F "Sensorized phantom for characterising large area deformation of soft bodies", Robotics and Automation Letters (2019) Under revision.
Maj C, Azevedo T, Giansanti V, Borisov O, Dimitri GM, Spasov S, Lio P, Merelli I "Integration of machine learning methods to dissect genetically imputed transcriptomic profiles in Alzheimer's Disease", Front Genet (2019) DOI
Marschner DE, Franck CO, Abt D, Mutlu H, Barner-Kowollik C "Fully independent photochemical reactivity in one molecule", Chem Commun (2019) DOI
Nikolka M, Simatos, D, Foudeh A, Pfattner R, McCulloch I, Bao Z "Low-voltage, dual-gate organic transistors with high-sensitivity and stability towards electrostatic biosensing", ACS Appl Mater Interfaces (2020) DOI
Shigeoka T, Koppers M, Wong HH-W, Lin JQ, Cagnetta R, Dwivedy A, de Freitas Nascimento J, van Tartwijk FW, Ströhl F, Cioni J-M, Schaeffer J, Carrington M, Kaminski CF, Jung H, Harris WA, Holt CE "On-site ribosome remodeling by locally synthesized ribosomal proteins in axons", J Cel Rep (2019) 11, 25. DOI
Spasov S, Lio P, "Dynamic neural network channel execution for efficient training", Proc BMVC Conf (2019) arXiv
Spasov S, Passamonti L, Duggento A, Liò P, Toschi N "A parameter-efficient deep learning approach to predict conversion from mild cognitive impairment to Alzheimer's disease", NeuroImage (2019) DOI
Vallejo Ramirez PP, Zammit J, Vanderpoorten O, Riche F, Blé F-X, Zhou X-H, Spiridon B, Valentine C, Spasov SE, Oluwasanya PW, Goodfellow G, Fantham MJ, Siddiqui O, Alimagham F, Robbins M, Stretton A, Simatos D, Hadeler O, Rees EJ, Ströhl F, Laine RF, Kaminski CF "OptiJ: Open-source optical projection tomography of large organ samples", Sci Rep 9, (2019) 15693 DOI
Vanderpoorten O, Peter Q, Challa PK, Keyser UF, Baumberg J, Kaminski CF, Knowles TPJK "Scalable integration of nano-, and microfluidics with hybrid two-photon lithography", Microsystems & Nanoengineering (2019) 5: 40 DOI
2018
Birrel S, Hughes J, Iida F "A data-driven approach to selective robotic harvesting of iceberg lettuce", Journal of Field Robotics (2018) Submitted, under review.
Chen H-Y, Schweicher G, Planells M, Ryno SM, Broch K, White AJP, Simatos D, Little M, Jellett C, Cryer SJ, Marks A, Hurhangee M, Brédas J-L, Sirringhaus H, McCulloch I "Crystal engineering of dibenzothiophenothieno [3,2-b]thiophene (DBTTT) isomers for organic field-effect transistors", Chem. Mater. (2018) 30: 21, 7587-7592. DOI
Christensen CN, Iles-Smith J, Petersen TS, Mork J, McCutcheon DPS "Driving-induced population trapping and linewidth narrowing via the quantum Zeno effect", Phys. Rev. A (2018) 97: 6, 063807.
Frechter S, Bates AS, Tootoonian S, Dolan M-J, Manton JD, Jamasb A, Kohl J, Bock D, Jefferis GSXE "Functional and anatomical specificity in a higher olfactory centre", bioRxiv (2018). DOI
Ghosh A, Manton JD, Mustafa AR, Gupta M, Garcia A, Rees EJ, Christie G "Proteins encoded by the gerP operon are localised to the inner coat in Bacillus cereus spores and are dependent on GerPA and SafA for assembly", Applied and Environmental Microbiology (2018). DOI
Gielen F, Colin P-Y, Mair P, Hollfelder F "Ultrahigh-throughput screening of single-cell lysates for directed evolution and functional metagenomics", Protein Engineering: Methods and Protocols (eds Bornscheuer UT, Hohne M) (2018), 297-309 (Springer New York, 2018).
Gilday K, Hughes J, Iida F "Achieving flexible assembly using autonomous robotic systems" IROS Conference (2018) Accepted.
He C, Ji H, Huang Z, Wang T, Zhang X, Liu Y, Fang M, Wu X, Zhang J, Min X "Red-shifted emission in Y3MgSiAl3012: Ce3+ Garnet Phosphor for blue light pumped white light emitting diodes", J. Phys. Chem. C (2018), 122: 27, 15659-15665. DOI |
Huang J, de Nijs B, Cormier S, Sokolowski K, Grys D-B, Readman CA, Barrow SJ, Scherman OA, Baumberg J "Plasmon-Induced Optical Control over Dithionite-Mediated Chemical Redox Reactions", Faraday Discuss. (2018). DOI
Hughes J, et al "Achieving robotically peeled lettuce", IEEE Robotics and Automation Letters (2018) 2377-3766. DOI | pdf
Hughes J, Iida F "Localised differential sensing of soft deformable surfaces", Soft Robotics (2018).
Hughes J, Iida F "Multi-functional soft strain sensors for wearable physiological monitoring", Sensors (2018) Accepted.
Hughes J, Iida F "Tack and deformation based sensorised gripping using conducive hot melt adhesive", RoboSoft Conference (2018).
Laine RF, Goodfellow G, Young LJ, Travers J, Carroll D, Dibben O, Bright H, Kaminski CF "Structured illumination microscopy combined with machine learning enables the high throughput analysis and classification of virus structure", eLife (2018);7:e40183. DOI
van Loo B, Heberlein M, Mair P, Zinchenko A, Schuurmann J, Eenink BDG, Dilkaute C, Jose J, Hollfelder F, Bornberg-Bauer E "High-Throughput, Lysis-free screening for sulfatase activity using Escherichia coli autodisplay in microdroplets", bioRxiv (2018). DOI
Manton JD, Xiao Y, Turner RD, Christie G, Rees EJ "ELM: Super-resolution analysis of wide-field images of fluorescent shell structures", Methods and Applications in Fluorescence (2018), 6: 037001. DOI
Ruggiero MT, Kölbel J, Li Q, Zeitler JA "Predicting the structures and associated phase transitions mechanisms in disordered crystals via a combination of experimental and theoretical methods", Faraday Discuss. (2018). DOI
Ruggiero MT, Kölbel J, Zhang W, Mittleman DM, Zeitler JA "The atomic dynamics of disordered crystals elucidated with terahertz time-domain spectroscopy and ab initio simulations", In Proc. of 43rd Int. Conf. on Infrared, Millimeter, and Terahertz Waves (IRMMW-THz) (2018) DOI.
Spasov SE, Hauk O, Farahibozorg S-R "Decoding semantic word categories from electro- and magnetoencephalography data", Proc. 15th Int. Conf. on Computational Intelligence Methods for Bioinformatics and Biostatistics, Springer (2018).
Spasov SE, Passamonti L, Duggento A, Lio P, Toschi N "A multi-model convolutional neural network framework for the prediction of Alzheimers Disease", Proc. 40th Annual Int. Conf. IEEE Engineering in Medicine and Biology Society (EMBC) (2018).
Spiridon BF, Griffin PH, Jarman JC, Liu Y, Zhu T, Luca AD, Oliver RA, Udrea F "On-Chip Thermal Insulation Using Porous GaN", Eurosensors Proceedings (2018), 2, 776.
Wang T, Centeno A, Darvill D, Pang JS, Ryan MP, Xie F "Tuneable fluorescence enhancement over nanostructure ZnO arrays with controlled morphology", Physical Chemistry Chemical Physics (2018), 20(21): 14828-14834. DOI
Wang T, Kim H-K, Liu Y, Li W, Griffiths JT, Wu Y, Laha S, Fong KD, Padjaski F, Yun C, Vasant Kumar R, Lotsch BV, Cheetham AK, Smoukov SK "Bottom-up formation of carbon-based structures with multilevel hierarchy from MOF-guest polyhedra", J. Am. Chem. Soc. (2018), 140(19): 6130-6136. DOI
2017
Bonner O, Beardsall K, Crilly N, et al "There were more wires than him: the potential for wireless patient monitoring in neonatal intensive care", BMJ Innovations (2017), 3: 12-18.
Cheah M, Hughes J, Iida F "Data synthesization for classification in autonomous robotic grasping system using 'catalogue-style' images", TAROS (2017) Springer, Cham.
Culha U, Hughes J, et al "Design principles for soft-rigid hybrid manipulators", Soft Robotics: Trends, Applications and Challenges (2017) Springer, Cham, 87-94.
Fong KD, Wang T, Smoukov SK "Multidimensional performance optimisation of conducting polymer-based supercapacitor electrodes", Sustainable Energy & Fuels (2017), 1(9): 1857-1874. DOI
Fong KD, Wang T, Kim H-K, Vasant Kumar R, Smoukov SK "Semi-Interpenetrating polymer networks for enhanced supercapacitor electrodes", ACS Energy Letters (2017) 2(9): 2014-2020. DOI
Gordillo-Dagallier L, Olivares J, Marco-Dufort B, Olivera J, Escolano J, Mirea T, Clement M, Iborra E "Integration of multilayered graphene on AIN based resonators as a functionalisation platform for biosensors", Joint Conference of the European Frequency and Time Forum and IEEE International Frequency Control Symp (2017).
Hughes J, Iida F, "Localised differential sensing of soft deformable surfaces", Robotics and Automation (2017), IEEE International Conf.
Hughes J, Iida F, "3D printed sensorised soft robotic manipulator design", Conference towards autonomous robotic systems (2017), Springer, Cham.
Lin I-T, Wang T, Zhang F, Smoukov SK "Fault-tolerant electro-responsive surfaces for dynamic micropattern molds and tunable optics", Scientific Report (2017), 7:12481. DOI
Mair P, Gielen F, Hollfelder F "Exploring sequence space in search of functional enzymes using microfluidic droplets", Current Opinion Chemical Biology (2017), 37: 137-144.
Marco B, Gordillo-Dagallier L, Escolano J, Olivares J, Clement M, Mejias D, Iborra E "Integration of graphene on AIN based high frequency resonators and their functionalisation for biosensing", Proceedings (2017) 4: 539.
Occhipinti LG, Oluwasanya PW "Particulate matter monitoring: Past, present and future, a review", Int J Earth Environ Sci (2017), 2: IJEES-144.
Wang T, Farajollahi M, Henke S, Zhu T, Bajpe SR, Sun S, Barnard JS, Lee JS, Madden JDW, Cheetham AK, Smoukov SK "Functional conductive nanomaterials via polymerisation in nano-channels: PEDOT in a MOF", Materials Horizons (2017), 4(1): 64-71. DOI
Watson J, Hughes J, Iida F "Real-world, real-time robotic grasping with convolutional neural networks", Conference towards autonomous robotic systems, (2017) Springer, Cham.
2016
Cai W, Vanderpoorten O, Kaminski CF "Tomographic absorption spectroscopy based on wavelength modulcation and multi-harmonic detections", Imaging and Applied Optics (2016) OSA Technical Digest (online), JT3A.19. DOI
Costa M, Manton JD, Ostrovsky AD, Prohaska S, Jefferis G "NBLAST: Rapid, sensitive comparison of neuronal structure and construction of neuron family databases", Neuron (2016), 91, 293-311. DOI |
Hemmig EA, Creatore C, Wunsch B, Hecker L, Mair P, Parker MA, Emmott S, Tinnefeld P, Keyser UF, Chin AW "Programming Light-Harvesting Efficiency Using DNA Origami", Nano Lett (2016), 16:2369-2374.
Hughes J, et al "Soft manipulators and grippers: A review", Frontiers in Robotics and AI (2016), 69.
Hughes J "Robotic rescue simulation for computing teaching in the UK: A case study", Global Engineering Education Conference (EDUCON) (2016), IEEE.
Manton JD, Rees EJ "triSPIM: light sheet microscopy with isotropic super-resolution", Optics Letters (2016), 41: 4170-4173. DOI |
Manton JD, Hughes J, Bonner O, Amjad OA, Mair P, Miele I, Wang T, Levdik V, Hall RD, Baekelandt G, da Cruz Vasconcellos F, Hadeler H, Hutter T, Kaminski CF "Development of an open technology sensor suite for assisted living: a student-led research project", Interface Focus (2016), 6: 20160018. DOI |
Rughoobur G, DeMiguel-Ramos T, Mirea M, Clement J, Olivares B, Díaz-Durán B, Sangrador J, Miele I, Milne WI, Iborra E, Flewitt AJ "Room temperature sputtering of inclined c-axis ZnO for shear mode solidly mounted resonators", App. Phys. Lett. (2016), 108, 034103. DOI |
Wang T, Farajollahi M, Choi YS, Lin I-T, Marshall JE, Thompson NM, Kar-Narayan S, Madden JDW, Smoukov SK "Electroactive polymers for sensing", Interface Focus (2016), 6: 20160026. DOI |
Wang T, Farajollahi M, Henke S, Zhu T, Bajpe SR, Sun S, Barnard JS, Sang Lee J, Madden JDW, Cheetham AK, Smoukov SK. "Functional Conductive Nanomaterials via Polymerisation in Nano-channels: PEDOT in a MOF", Mater. Horiz., Communication (2016). DOI
2015
Hughes J, Yan J, Soga K "Development of wireless sensor network using Bluetooth low energy (BLE) for construction noise monitoring", International Journal on Smart Sensing and Intelligent Systems (2015), 8(2), 1379-1405. pdf
Manetsberger J, Manton JD, Erdelyi MJ, Lin H, Rees D, Christie G, Rees EJ "Ellipsoid localization microscopy infers the size and order of protein layers in bacillus spore coats", Biophys. J. (2015), 109(10), 2058-2066. DOI |
Wang T, Costan J, Centeno A, Pang JS, Darvill D, Ryan MP, Xie F "Broadband Enhanced Fluorescence Using Zinc-oxide Nanoflower Arrays", J. Mater. Chem. C. (2015) 3: 2656-2663. DOI
2014
Manton JD, Ostrovsky AD, Goetz L, Costa M, Rohlfing T, Jefferis GSXE "Combining genome-scale Drosophila 3D neuroanatomical data by bridging template brains", bioRxiv (2014). DOI
